All Classes

A class to process multiple SR files and their referenced instances (like Images, Presentation States and Segmentations) and build Hierarchical SOP Instance Reference Macros with which to (re-)populate CurrentRequestedProcedureEvidenceSequence.

A concrete class specializing Attribute for Age String (AS) attributes.

A class for extracting Analyze image input format headers.

Accept only SOP Classes for storage, query or retrieval of composite instances and verification SOP Classes with any explicit transfer syntax (whether compressed or not), also rejecting implicit VR transfer syntaxes if an explicit VR transfer syntax is offered for the same abstract syntax.

Accept any explicit transfer syntax (whether compressed or not), also rejecting implicit VR transfer syntaxes if an explicit VR transfer syntax is offered for the same abstract syntax.

A concrete class specializing Attribute for Application Entity (AE) attributes.

This class provides a list of known Application Entities, indexed by AET.

This class provides the infrastructure for creating applications (which extend this class) and provides them with utilities for creating a main window with a title and default close and dispose behavior, as well as access to properties, and a window snapshot function.

A specialized java.io.OutputStream which buffers and fragments data which is written to it into PDUs and sends them over the supplied OutputStream which is (presumably) that of the java.net.Socket of an established Association.

A class that extends FilterOutputStream by creating a separate thread to actually perform the output operations, and returning immediately from write calls, but blocking on closing.

The AttributeFactory class is a factory class of static methods for creating concrete instances of the abstract class Attribute based on their value representation.

An interface to supply the criteria for prematurely terminating the reading of a DICOM file.

The abstract AttributeListFunctionalGroupsTableModelAllFrames class extends a AttributeListFunctionalGroupsTableModel to abstract the contents of a list of attributes containing shared and per-frame functional groups for multi-frame objects as a table with a row for each frame in order to provide support for a AttributeListTableBrowser.

The AttributeListTableBrowser class implements a Swing graphical user interface to browse the contents of an AttributeListTableModel.

An individual DICOM data element (attribute) tag that includes a group and element (each a 16 bit unsigned binary).

The AttributeTree class implements a TreeModel to abstract the contents of a list of attributes as a tree in order to provide support for a AttributeTreeBrowser.

Instances of the AttributeTreeRecord class represent nodes in a tree of the AttributeTree class, which in turn is used by the AttributeTreeBrowser class.

A class that extends FilterInputStream by adding the concept of little and big endian binary value encoding, and supplies functions for reading various sized integer and floating point words.

Various static methods helpful for manipulating arrays of bytes and extracting values from them.

Various capability detection methods.

This class is an entire application for displaying and viewing chest x-ray images.

This class represents a concept that has a coded representation.

A concrete class specializing Attribute for Code String (CS) attributes.

A class to encapsulate the attributes of an Item of CodingSchemeIdentificationSequence.

A class to encapsulate color palettes, including serialization and deserialization to and from standard DICOM color palette IODs.

Standard DICOM Hot Metal Blue color palette.

Standard DICOM PET 20 Step color palette.

This class supports anatomic concepts that may be combinations of one another.

make a translet from any XSL-T source file.

A class to select which entities are copied or propagated or removed or not during operations on CompositeInstanceContext.

Accept only SOP Classes for storage, query or retrieval of composite instances and verification SOP Classes.

This class copies a set of DICOM image files, compressing them losslessly with JPEG 2000 (default), JPEG 10918-1 Lossless Huffman SV1, JPEG-LS or RLE.

The CompressedFrameEncoder class implements compression of specified frames in various supported Transfer Syntaxes, which can then be incorporated in DICOM encapsulated images.

A class of static methods to make consumer format images from DICOM images.

A class with methods for constructing a ContentItem of the appropriate class from a list of attributes.

An abstract class for representing a node in an internal representation of a structured reporting tree (an instance of StructuredReport).

This class provides conversion of a set of Amicas JPEG 2000 files to DICOM.

A class of static methods to convert PALETTE COLOR to MONOCHROME2 images.

A class to convert all SRT codes to SCT codes.

A class for copying an entire input stream to an output stream.

This class encapsulates information pertaining to anatomy of CT images.

The DatabaseInformationModel class is an abstract class that contains the core functionality for storing, accessing and maintaining a persistent representation of selected attributes of composite objects.

The DatabaseTreeBrowser class implements a Swing graphical user interface to browse the contents of DatabaseInformationModel.

Instances of the DatabaseTreeRecord class represent nodes in a tree of the DatabaseTreeModel class, which in turn is used by the DatabaseTreeBrowser class.

A concrete class specializing Attribute for Date Time (DT) attributes.

Various static methods helpful for handling dates.

This class copies a set of DICOM files, decompressing them if compressed.

A class to implement bulk de-identification and redaction of DICOM files.

This class provides methods for removing entries from a database, all its children and any associated files that were copied into the database (rather than referenced).

This class describes the graphics environment (number and type and size of displays).

The DicomAndWebStorageServer implements a DICOM storage server with query and retrieval as well as an HTTP server that responds to web requests including WADO as well as an external SQL database access server.

This class is an application for importing or retrieving DICOM studies, cleaning them (i.e., de-identifying them or replacing UIDs, etc.), and sending them elsewhere.

The DicomDictionary class is a complete standard dictionary of DICOM attributes and associated information.

The DicomDictionaryForMinimalPatientStudySeriesInstanceModel class supports a simple DICOM Patient/Study/Series/Concatenation/Instance model.

The DicomDictionaryForStudySeriesInstanceModel class supports a minimal DICOM Study/Series/Instance model.

This class displays images and allows the user to black out burned-in annotation, and save the result.

A class that extends BinaryInputStream by adding the concept of transfer syntaxes, for a (possible) meta information header and a data set.

A class that encapsulates the features and values from a DICOM ECG source, usually for the purpose of displaying it.

A class to copy DICOM attributes from anm input stream to an output stream, converting the encoding of the attributes between transfer syntaxes if necessary.

This class represents anatomic concepts that may be encoded and displayed.

This class represents laterality concepts that may be encoded and displayed.

A set of display shutter parameters constructed from the attributes of the DICOM Display Shutter Module.

This class is an application for retrieving dose information about DICOM studies of patients.

A class to provide various static methods for drawing.

This class is an entire application for displaying and viewing DICOM and SCP ECG waveforms.

A class to create a DICOM encapsulated data object from a data file and supplied metadata and/or composite context.

A class for encapsulating compressed grayscale or RGB consumer image format input files (that JIIO can recognize) into DICOM images of a specified SOP Class, or single or multi frame DICOM Secondary Capture images.

Use a translet from an XSL-T source file to transform one XML file to another.

A class to extract Exposure Dose Sequence and related attributes from Philips modality dose report screen saves.

Various static methods helpful for handling files.

This class copies a set of DICOM files, if they match specified criteria.

This class implements the SCU role of C-FIND SOP Classes.

Various static methods helpful for formatting floating point values.

This class provides a user interface for applications to configure and test properties related to remote FTP hosts.

A class to send files via FTP or secure FTP over TLS.

This class implements a dialog for users to enter ftp remote host configuration parameters.

This class provides a description of the parameters of a remote FTP host.

A class to select which functional groups are copied or propagated or removed or not during operations on functional groups.

A class to describe the spatial geometry of a single cross-sectional image slice.

A class to describe the spatial geometry of an entire volume of contiguous cross-sectional image slices.

This class implements the SCU role of C-GET SOP Classes.

Various static methods helpful for dumping decimal and hexadecimal values.

A class to represent the study, series and instance identifiers necessary to retrieve a specific instance using the hierarchical model.

A class to implement Huffman decoding as used by the SCP-ECG standard.

A class to extract selected DICOM annotative attributes into defined displayed area relative positions for icons.

This class provides a mechanism to process each identifier response of a C-FIND as it is received.

A class to represent a non-hierarchical image reference.

A class for encoding channel parameters describing immunostaining (including antibodies, fluorescence).

A class to provide enumerated constants for the entities of the DICOM Information Model.

A class containing an application for inserting Real World Value Maps from the command line.

A concrete class specializing Attribute for Integer String (IS) attributes.

A class to encode a representation of a DICOM Structured Report object in a JSON form, suitable for analysis as human-readable text.

A class of static methods to copy a DICOM image and retain only enough to describe pixels.

An factory class that provides instances of LocalizerPoster that are used for posting the position of specified slices and volumes on (usually orthogonal) localizer images.

This class implements a thin wrapper around a subset of methods of the LoggerFactory class from the SLF4J facade, in order to allow those methods commonly used by the toolkit to be usable without invoking a runtime dependency on the SLF4J jar files.

A concrete class specializing Attribute for Long Text (LT) attributes.

A class for fetching the MAC address of one of the local host network interfaces.

This class encapsulates information pertaining to breast-specific laterality as used in Mammo CAD Image Library entries.

The MapTableBrowser class extends a JTable to browse a list of attributes and their values as a single row table with columns headed by the attribute descriptions (if supplied) or their names.

This class is designed to support the importation of DICOM files from interchange media (such as CDs and DVDs).

A class containing an application for merging the composite context of multiple instances for consistency.

A class containing an application for merging the functional groups of multiple instances for consistency.

A transformation constructed from a DICOM attribute list that extracts those attributes that define the Modality LUT transformation, specifically the window center and width attributes.

A class that extends OutputStream to track statistics on the transfers.

A class to create a set of instances, which when given unenhanced ("classic") images creates one or more enhanced multiframe image instances from them where possible, otherwise leaves them alone but includes them in the set.

This class implements a multi-modality simulator that takes a database of existing studies to provide a source of sample images and DICOM attributes, and for each modality within the database, generates random new patients and studies at random intervals using the current date and time.

This class encapsulates information about DICOM network devices.

This class provides common support to applications requiring properties related to DICOM network services.

This class provides a dynamic registry of DICOM network parameters possibly federated from various sources.

This class defines a number of useful defaults and constants and utilities to generate defaults.

Various static methods helpful for network activities.

A class for extracting NIfTI-1 image input format headers.

A class for converting NRRD image input format files into images of a specified or appropriate SOP Class.

A class for OCR of GE and Siemens modality dose report screen saves.

An abstract class specializing Attribute for Other (OB or OW) attributes whose values are not memory resident.

A concrete class specializing Attribute for Other Byte (OB) attributes whose compressed frames are not memory resident.

A concrete class specializing Attribute for Other Byte (OB) attributes whose values are memory or file resident compressed pixel data frames.

A concrete class specializing Attribute for Other Byte (OB) attributes whose values are an array of bytes per frame rather than a single contiguous array containing all frames.

A concrete class specializing Attribute for Other Double (OD) attributes.

A concrete class specializing Attribute for Other Float (OF) attributes whose values are not memory resident but rather are stored in multiple files on disk.

A concrete class specializing Attribute for Other Very Long (OV) attributes.

A concrete class specializing Attribute for Other Word (OW) attributes whose values are not memory resident but rather are stored in multiple files on disk.

A concrete class specializing Attribute for Other Word (OW) attributes whose values are not memory resident.

The PatientStudySeriesConcatenationInstanceModel class supports a simple DICOM Patient/Study/Series/Concatenation/Instance model.

A class for to encapsulate JPedal PDF decoding capability if available at runtime without requiring it for compilation.

A class for converting PDF files into a single or multi frame DICOM Secondary Capture image with one frame per page.

A concrete class specializing Attribute for Person Name (PN) attributes.

A class for computing message digests of pixel data, decompressed if compressed.

Implements a component that can display an array of tiles, each of which is a 2D graph of sample values.

Implementations of this interface accept or reject Presentation Contexts from a list based on the proposed combinations of Abstract Syntax and Transfer Syntax.

A class to write log and status messages to a PrintStream such as System.err.

This class provides utilities to probe the capabilities of potential DICOM Application Entities, used for example to maintain a cache of potential C-MOVE targets.

This class encapsulates information pertaining to anatomy of projection x-ray images.

The QueryInformationModel class is an abstract class that contains the core functionality for performing DICOM query and retrieval over the network.

The QueryTreeModel class implements a TreeModel to abstract the contents of a query response as a tree in order to provide support for a QueryTreeBrowser.

A class for extracting a JSON encoded raw input format description.

A class for converting raw RGB color single frame image input format files (such as from Visible Human) into one or more DICOM multi-frame secondary capture images.

A class for converting raw image input format files into images of a specified or appropriate SOP Class.

This class allows the reconstruction of a database from the stored instance files, such as when the database schema model has been changed.

This abstract class provides a mechanism for performing processing on a DICOM data set that has been completely received and stored in a file.

A class to read a map of Study, Series, SOP Instance and Frame of Reference UIDs pairs, and then remap occurences in a set of DICOM files to the other member of the pair.

The RequestTypeServer implements an HTTP server that responds to requests of a specified type and dispatches the further handling to a derived class corresponding to the request type.

This interface abstracts the communication between a retrieve (C-MOVE) server that implements the network service, and the source of information with which to respond to the retrieve request.

A class containing an application for rotating and/or flipping a set of images and updating the other attributes accordingly.

A class that implements Runnable so that it can be invoked by EventQueue.invokeLater().

This class represents a concept by a combination of CodingSchemeDesignator and CodeValue.

A class to encapsulate an entire SCP-ECG object.

The SCPTree class implements a TreeModel to abstract the contents of a list of attributes as a tree in order to provide support for a SCPTreeBrowser.

Instances of the SCPTreeRecord class represent nodes in a tree of the SCPTree class, which in turn is used by the SCPTreeBrowser class.

A class to encapsulate the SCP-ECG Pointers to Data Areas section.

A class to encapsulate the SCP-ECG Lead Measurement Results section.

A class to encapsulate the SCP-ECG Lead Definition section.

A class to encapsulate the SCP-ECG Encoded Reference Beat Data and Residual or Rhythm Data sections.

A class to encapsulate the SCP-ECG Textual Diagnosis and Universal Interpretative Statement Codes sections.

A class to provide support for the contents of an individual item of a DICOM Sequence (SQ) attribute, each of which consists of an entire dataset (list of attributes).

A class to describe a set of DICOM files and their features such as SOP Class, Instance and Transfer Syntax UIDs.

A concrete class specializing Attribute for Short String (SH) attributes.

A class of static methods to read DICOM segmentation images, and shrink their extent to the minimum bounding box surrounding the segments.

A concrete class specializing Attribute for Signed Short (SS) attributes.

Implements a component that can display a single or multi-frame image in a single panel with window center/width adjustment, scrolling through frames of a multi-frame image, resizing to the size of the panel, annotation of pre-defined text and shapes, feedback of cursor position status (2D and 3D position, pixel value, window).

The abstract base class of classes that implement individual DICOM SOP Classes or groups of SOP Classes that behave similarly (for example the composite instance Storage SOP Classes).

A class to represent a non-hierarchical instance reference.

A class that encapsulates the pixel data and features and values from an image source (such as a DICOM image), usually for the purpose of displaying it.

A class that encapsulates a subset of frame sin a multi-frame SourceImage.

A class that encapsulates the features and values from an MR spectroscopy source, usually for the purpose of displaying it.

A class to encapsulate information describing references in a structured report to images, with or without spatial coordinates.

Implements a component that can display a single or multi-frame spectra in a single panel, over an optional background image, with scrolling through frames of a multi-frame spectra, resizing to the size of the panel, feedback of cursor position status.

The StandaloneAttributeTreeBrowser class implements a Swing graphical user interface to browse the contents of an AttributeTree using an AttributeTreeBrowser.

This class implements the SCP role of SOP Classes of the Storage Service Class, the Study Root Query Retrieve Information Model Find, Get and Move SOP Classes, and the Verification SOP Class.

This class implements the SCU role of SOP Classes of the Storage Service Class.

This is an abstract class to support creating path names for how to organize the folders and files for stored composite instances based on their SOP Instance UID.

Store files in a hierarchy of folders using successive decimal digits of the hashcode of the SOP Instance UID as the folder name and the SOP Instance UID as the filename within the most deeply nested folder.

An abstract class specializing Attribute for the family of string attributes.

Various static methods helpful for comparing and manipulating strings.

The StructuredReportTreeBrowser class implements a Swing graphical user interface to browse the contents of a StructuredReport.

The StudySeriesInstanceModel class supports a minimal DICOM Study/Series/Instance model.

A class that supports matching the geometry of a superimposed DICOM image and an underlying images, and creating BufferedImages suitable for drawing on an underlying image.

A class that supports matching the geometry of a superimposed image and an underlying images, and creating BufferedImages suitable for drawing on an underlying image.

A class for synchronizing the contents of a local database of DICOM objects with a remote SCP.

A class to private remote logging via the BSD syslog service (UDP on port 514).

The TagFromName class contains a selected list of constant values for frequently used AttributeTags.

This class implements the SCU role of SOP Classes of the Storage Service Class.

A class to encapsulate a text annotation positioned left or right and top or bottom with row offset relative to an abstract rectanglular frame.

A class for computing message digests of pixel data, decompressed if compressed, from TIFF files.

The TiledFramesIndex class ...

A concrete class specializing Attribute for Time (TM) attributes.

A class to lookup the DICOM Transfer Syntax UID from a string name.

A class to read a set of DICOM files and translate the Image Position (Patient) by a fixed offset.

A class to identify duplicate images based on having the same pixel data hash and constructing collections of their duplicate Study, Series, SOP Instance and Frame of Reference UIDs.

A class to extract the content of a DICOM encapsulated data object into a file.

Accept only SOP Classes for storage of composite instances and verification SOP Classes with uncompressed or deflated or bzip but not encapsulated compressed transfer syntaxes, also rejecting implicit VR transfer syntaxes if an explicit VR transfer syntax is offered for the same abstract syntax.

A concrete class specializing Attribute for Unique Identifier (UI) attributes.

A concrete class specializing Attribute for Unknown (UN) attributes.

A concrete class specializing Attribute for Unlimited Text (UT) attributes.

A concrete class specializing Attribute for Unsigned Long (UL) attributes.

A concrete class specializing Attribute for Unsigned Very Long (UV) attributes.

A class for creating and convertin UUID based OIDs.

This class implements the SCU role of the Verification SOP Class.

A class of static methods for handling veterinary (animal) data.

A transformation constructed from a DICOM attribute list that extracts those attributes that define the VOI LUT transformation, specifically the window center and width attributes.

The WadoServer implements an HTTP server that responds to WADO GET requests as defined by DICOM PS 3.18 (ISO 17432), which provides a standard web (http) interface through which to retrieve DICOM objects either as DICOM files or as derived JPEG images.

The WebRequest class parses a URL that contains a requestType parameter and additional query parameters.

A class to encode a representation of a DICOM Structured Report object in an XML form, suitable for analysis as human-readable text, or for feeding into an XSLT-based validator.