Class NIfTI1ToDicom


  • public class NIfTI1ToDicom
    extends java.lang.Object

    A class for converting NIfTI-1 image input format files into images of a specified or appropriate SOP Class.

    • Field Summary

      Fields 
      Modifier and Type Field Description
      protected static boolean preferSForm  
    • Constructor Summary

      Constructors 
      Constructor Description
      NIfTI1ToDicom​(java.lang.String inputFileName, java.lang.String outputFileName, java.lang.String patientName, java.lang.String patientID, java.lang.String studyID, java.lang.String seriesNumber, java.lang.String instanceNumber)
      Read a NIfTI-1 image input format files and create an image of a specified or appropriate SOP Class.
      NIfTI1ToDicom​(java.lang.String inputFileName, java.lang.String outputFileName, java.lang.String patientName, java.lang.String patientID, java.lang.String studyID, java.lang.String seriesNumber, java.lang.String instanceNumber, java.lang.String modality, java.lang.String sopClass)
      Read a NIfTI-1 image input format files and create an image of a specified or appropriate SOP Class.
    • Field Detail

      • preferSForm

        protected static boolean preferSForm
    • Constructor Detail

      • NIfTI1ToDicom

        public NIfTI1ToDicom​(java.lang.String inputFileName,
                             java.lang.String outputFileName,
                             java.lang.String patientName,
                             java.lang.String patientID,
                             java.lang.String studyID,
                             java.lang.String seriesNumber,
                             java.lang.String instanceNumber)
                      throws java.io.IOException,
                             DicomException,
                             NIfTI1Exception

        Read a NIfTI-1 image input format files and create an image of a specified or appropriate SOP Class.

        Parameters:
        inputFileName -
        outputFileName -
        patientName -
        patientID -
        studyID -
        seriesNumber -
        instanceNumber -
        Throws:
        java.io.IOException
        DicomException
        NIfTI1Exception
      • NIfTI1ToDicom

        public NIfTI1ToDicom​(java.lang.String inputFileName,
                             java.lang.String outputFileName,
                             java.lang.String patientName,
                             java.lang.String patientID,
                             java.lang.String studyID,
                             java.lang.String seriesNumber,
                             java.lang.String instanceNumber,
                             java.lang.String modality,
                             java.lang.String sopClass)
                      throws java.io.IOException,
                             DicomException,
                             NIfTI1Exception

        Read a NIfTI-1 image input format files and create an image of a specified or appropriate SOP Class.

        Parameters:
        inputFileName -
        outputFileName -
        patientName -
        patientID -
        studyID -
        seriesNumber -
        instanceNumber -
        modality - may be null
        sopClass - may be null
        Throws:
        java.io.IOException
        DicomException
        NIfTI1Exception
    • Method Detail

      • generateGeometryFunctionalGroupsFromNIfTI1Header

        public static AttributeList generateGeometryFunctionalGroupsFromNIfTI1Header​(NIfTI1Header nifti,
                                                                                     AttributeList list,
                                                                                     int numberOfFrames)
                                                                              throws DicomException

        Read a per-frame and shared functional group sequences for the geometry defined in a NIfTI-1 file header.

        Parameters:
        nifti - a NIfTI-1 header
        list - an existing (possibly empty) attribute list, if null, a new one will be created; may already shared and per-frame functional group sequences or they will be added
        numberOfFrames - return attribute list with per-frame and shared functional group sequences for geometry added
        Throws:
        DicomException
      • generateDICOMPixelDataModuleAttributesFromNIfTI1File

        public static AttributeList generateDICOMPixelDataModuleAttributesFromNIfTI1File​(java.io.File inputFile,
                                                                                         NIfTI1Header nifti,
                                                                                         AttributeList list)
                                                                                  throws java.io.IOException,
                                                                                         DicomException,
                                                                                         NIfTI1Exception

        Using a NIfTI-1 image input file and header, create DICOM Pixel Data Module attributes.

        Parameters:
        inputFile - a NIfTI-1 format image file
        nifti - a NIfTI-1 header already read from the inputFile
        list - an existing (possibly empty) attribute list, if null, a new one will be created; may already include "better" image pixel module attributes to use return attribute list with Image Pixel Module (including Pixel Data) and other attributes added
        Throws:
        java.io.IOException
        DicomException
        NIfTI1Exception
      • main

        public static void main​(java.lang.String[] arg)

        Read a NIfTI-1 image input format files and create an image of a specified or appropriate SOP Class.

        Parameters:
        arg - seven, eight or nine parameters, the inputFile, outputFile, patientName, patientID, studyID, seriesNumber, instanceNumber, and optionally the modality, and SOP Class